chore: Update dependencies

package.json

@@ -91,75 +91,74 @@
     "templates"
   ],
   "dependencies": {
-    "@comunica/context-entries": "^2.6.8",
-    "@comunica/query-sparql": "^2.6.9",
+    "@comunica/context-entries": "^2.8.2",
+    "@comunica/query-sparql": "^2.9.0",
     "@rdfjs/types": "^1.1.0",
     "@solid/access-control-policy": "^0.1.3",
     "@solid/access-token-verifier": "^2.0.5",
     "@types/async-lock": "^1.4.0",
-    "@types/bcryptjs": "^2.4.2",
-    "@types/cookie": "^0.4.1",
-    "@types/cors": "^2.8.12",
-    "@types/ejs": "^3.1.2",
-    "@types/end-of-stream": "^1.4.1",
-    "@types/fs-extra": "^11.0.1",
+    "@types/bcryptjs": "^2.4.4",
+    "@types/cookie": "^0.5.2",
+    "@types/cors": "^2.8.14",
+    "@types/ejs": "^3.1.3",
+    "@types/end-of-stream": "^1.4.2",
+    "@types/fs-extra": "^11.0.2",
     "@types/lodash.orderby": "^4.6.7",
-    "@types/marked": "^4.0.8",
-    "@types/mime-types": "^2.1.1",
-    "@types/n3": "^1.10.4",
-    "@types/node": "^14.18.43",
-    "@types/nodemailer": "^6.4.7",
+    "@types/mime-types": "^2.1.2",
+    "@types/n3": "^1.16.2",
+    "@types/node": "^18.18.4",
+    "@types/nodemailer": "^6.4.11",
     "@types/oidc-provider": "^8.4.0",
     "@types/proper-lockfile": "^4.1.2",
     "@types/pump": "^1.1.1",
     "@types/punycode": "^2.1.0",
-    "@types/rdf-validate-shacl": "^0.4.1",
-    "@types/sparqljs": "^3.1.4",
+    "@types/rdf-validate-shacl": "^0.4.4",
+    "@types/sparqljs": "^3.1.6",
     "@types/url-join": "^4.0.1",
-    "@types/uuid": "^9.0.1",
-    "@types/ws": "^8.5.4",
-    "@types/yargs": "^17.0.24",
+    "@types/uuid": "^9.0.5",
+    "@types/ws": "^8.5.7",
+    "@types/yargs": "^17.0.28",
     "arrayify-stream": "^2.0.1",
     "async-lock": "^1.4.0",
     "bcryptjs": "^2.4.3",
     "componentsjs": "^5.4.2",
-    "cookie": "^0.4.2",
+    "cookie": "^0.5.0",
     "cors": "^2.8.5",
     "cross-fetch": "^4.0.0",
     "ejs": "^3.1.9",
     "end-of-stream": "^1.4.4",
     "escape-string-regexp": "^4.0.0",
-    "fetch-sparql-endpoint": "^4.0.0",
+    "fetch-sparql-endpoint": "^4.1.0",
     "fs-extra": "^11.1.1",
-    "handlebars": "^4.7.7",
+    "handlebars": "^4.7.8",
     "ioredis": "^5.3.2",
     "iso8601-duration": "^2.1.1",
-    "jose": "^4.14.1",
-    "jsonld-context-parser": "^2.3.0",
+    "jose": "^4.15.2",
+    "jsonld-context-parser": "^2.3.2",
     "lodash.orderby": "^4.6.0",
-    "marked": "^4.3.0",
+    "marked": "^9.1.0",
     "mime-types": "^2.1.35",
-    "n3": "^1.16.4",
-    "nodemailer": "^6.9.1",
+    "n3": "^1.17.1",
+    "nodemailer": "^6.9.6",
     "oidc-provider": "^8.4.0",
     "proper-lockfile": "^4.1.2",
     "pump": "^3.0.0",
-    "punycode": "^2.1.1",
-    "rdf-dereference": "^2.1.0",
+    "punycode": "^2.3.0",
+    "rdf-dereference": "^2.2.0",
     "rdf-parse": "^2.3.2",
     "rdf-serialize": "^2.2.2",
     "rdf-string": "^1.6.3",
-    "rdf-terms": "^1.9.1",
+    "rdf-terms": "^1.11.0",
     "rdf-validate-shacl": "^0.4.5",
-    "sparqlalgebrajs": "^4.0.5",
-    "sparqljs": "^3.6.2",
+    "sparqlalgebrajs": "^4.3.0",
+    "sparqljs": "^3.7.1",
     "url-join": "^4.0.1",
-    "uuid": "^9.0.0",
-    "winston": "^3.8.2",
+    "uuid": "^9.0.1",
+    "winston": "^3.11.0",
     "winston-transport": "^4.5.0",
-    "ws": "^8.13.0",
-    "yargs": "^17.7.1",
-    "yup": "^1.0.2"
+    "ws": "^8.14.2",
+    "yargs": "^17.7.2",
+    "yup": "^1.3.2"
   },
   "devDependencies": {
     "@commitlint/cli": "^17.6.1",

src/server/notifications/BaseChannelType.ts

@@ -161,7 +161,8 @@ export abstract class BaseChannelType implements NotificationChannelType {
           }),
         },
       );
-      this.shaclQuads = await readableToQuads(shaclStream);
+      // Typing issue with rdf-parse library
+      this.shaclQuads = await readableToQuads(shaclStream as unknown as Readable);
     }
     return this.shaclQuads;
   }

test/unit/http/output/metadata/AllowAcceptHeaderWriter.test.ts

@@ -30,7 +30,7 @@ describe('An AllowAcceptHeaderWriter', (): void => {
   let writer: AllowAcceptHeaderWriter;
 
   beforeEach(async(): Promise<void> => {
-    response = createResponse();
+    response = createResponse() as HttpResponse;
 
     writer = new AllowAcceptHeaderWriter(
       [ 'OPTIONS', 'GET', 'HEAD', 'PUT', 'POST', 'PATCH', 'DELETE' ],
@@ -42,7 +42,7 @@ describe('An AllowAcceptHeaderWriter', (): void => {
     await expect(writer.handleSafe({ response, metadata: document })).resolves.toBeUndefined();
     const headers = response.getHeaders();
     expect(typeof headers.allow).toBe('string');
-    expect(new Set((headers.allow as string).split(', ')))
+    expect(new Set(headers.allow!.split(', ')))
       .toEqual(new Set([ 'OPTIONS', 'GET', 'HEAD', 'PUT', 'PATCH', 'DELETE' ]));
     expect(headers['accept-patch']).toBe('text/n3, application/sparql-update');
     expect(headers['accept-put']).toBe('*/*');
@@ -53,7 +53,7 @@ describe('An AllowAcceptHeaderWriter', (): void => {
     await expect(writer.handleSafe({ response, metadata: emptyContainer })).resolves.toBeUndefined();
     const headers = response.getHeaders();
     expect(typeof headers.allow).toBe('string');
-    expect(new Set((headers.allow as string).split(', ')))
+    expect(new Set(headers.allow!.split(', ')))
       .toEqual(new Set([ 'OPTIONS', 'GET', 'HEAD', 'POST', 'PATCH', 'DELETE' ]));
     expect(headers['accept-patch']).toBe('text/n3, application/sparql-update');
     expect(headers['accept-post']).toBe('*/*');
@@ -63,7 +63,7 @@ describe('An AllowAcceptHeaderWriter', (): void => {
     await expect(writer.handleSafe({ response, metadata: fullContainer })).resolves.toBeUndefined();
     const headers = response.getHeaders();
     expect(typeof headers.allow).toBe('string');
-    expect(new Set((headers.allow as string).split(', ')))
+    expect(new Set(headers.allow!.split(', ')))
       .toEqual(new Set([ 'OPTIONS', 'GET', 'HEAD', 'POST', 'PATCH' ]));
     expect(headers['accept-patch']).toBe('text/n3, application/sparql-update');
     expect(headers['accept-post']).toBe('*/*');
@@ -73,7 +73,7 @@ describe('An AllowAcceptHeaderWriter', (): void => {
     await expect(writer.handleSafe({ response, metadata: storageContainer })).resolves.toBeUndefined();
     const headers = response.getHeaders();
     expect(typeof headers.allow).toBe('string');
-    expect(new Set((headers.allow as string).split(', ')))
+    expect(new Set(headers.allow!.split(', ')))
       .toEqual(new Set([ 'OPTIONS', 'GET', 'HEAD', 'POST', 'PATCH' ]));
     expect(headers['accept-patch']).toBe('text/n3, application/sparql-update');
     expect(headers['accept-post']).toBe('*/*');
@@ -83,7 +83,7 @@ describe('An AllowAcceptHeaderWriter', (): void => {
     await expect(writer.handleSafe({ response, metadata: error404 })).resolves.toBeUndefined();
     const headers = response.getHeaders();
     expect(typeof headers.allow).toBe('string');
-    expect(new Set((headers.allow as string).split(', ')))
+    expect(new Set(headers.allow!.split(', ')))
       .toEqual(new Set([ 'PUT', 'PATCH' ]));
     expect(headers['accept-patch']).toBe('text/n3, application/sparql-update');
     expect(headers['accept-put']).toBe('*/*');
@@ -94,7 +94,7 @@ describe('An AllowAcceptHeaderWriter', (): void => {
     await expect(writer.handleSafe({ response, metadata: error405 })).resolves.toBeUndefined();
     const headers = response.getHeaders();
     expect(typeof headers.allow).toBe('string');
-    expect(new Set((headers.allow as string).split(', ')))
+    expect(new Set(headers.allow!.split(', ')))
       .toEqual(new Set([ 'OPTIONS', 'GET', 'HEAD', 'POST', 'PATCH', 'DELETE' ]));
     expect(headers['accept-patch']).toBe('text/n3, application/sparql-update');
     expect(headers['accept-put']).toBeUndefined();

test/unit/http/output/metadata/RangeMetadataWriter.test.ts

@@ -11,7 +11,7 @@ describe('RangeMetadataWriter', (): void => {
 
   beforeEach(async(): Promise<void> => {
     metadata = new RepresentationMetadata();
-    response = createResponse();
+    response = createResponse() as HttpResponse;
     writer = new RangeMetadataWriter();
   });
 

test/unit/identity/interaction/pod/util/OwnerMetadataWriter.test.ts

@@ -4,6 +4,7 @@ import { RepresentationMetadata } from '../../../../../../src/http/representatio
 import { OwnerMetadataWriter } from '../../../../../../src/identity/interaction/pod/util/OwnerMetadataWriter';
 import { PodStore } from '../../../../../../src/identity/interaction/pod/util/PodStore';
 import type { StorageLocationStrategy } from '../../../../../../src/server/description/StorageLocationStrategy';
+import type { HttpResponse } from '../../../../../../src/server/HttpResponse';
 import { joinUrl } from '../../../../../../src/util/PathUtil';
 
 describe('An OwnerMetadataWriter', (): void => {
@@ -20,7 +21,7 @@ describe('An OwnerMetadataWriter', (): void => {
   beforeEach(async(): Promise<void> => {
     metadata = new RepresentationMetadata(target);
 
-    response = createResponse();
+    response = createResponse() as HttpResponse;
 
     podStore = {
       findByBaseUrl: jest.fn().mockResolvedValue({ id, accountId }),

test/unit/server/HandlerServerConfigurator.test.ts

@@ -35,7 +35,7 @@ describe('A HandlerServerConfigurator', (): void => {
       writeHead: jest.fn(),
     } as any;
     response.end.mockImplementation((): any => {
-      response.headersSent = true;
+      (response as any).headersSent = true;
     });
     response.writeHead.mockReturnValue(response);
 
@@ -43,7 +43,7 @@ describe('A HandlerServerConfigurator', (): void => {
 
     handler = {
       handleSafe: jest.fn((): void => {
-        response.headersSent = true;
+        (response as any).headersSent = true;
       }),
     } as any;
 
@@ -89,7 +89,7 @@ describe('A HandlerServerConfigurator', (): void => {
   });
 
   it('does not write an error if the response had been started.', async(): Promise<void> => {
-    response.headersSent = true;
+    (response as any).headersSent = true;
     handler.handleSafe.mockRejectedValueOnce(new Error('dummyError'));
     server.emit('request', request, response);
     await flushPromises();